| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 1 | 1 | 1 | Louisiana | Clint Frazier (prospect) |
OF |
| 2 | 1 | 2 | Durham | Willy Adames (prospect) |
SS |
| 3 | 1 | 3 | Westchester (from Jonesboro) |
Robert Gsellman | P |
| 4 | 1 | 4 | Long Island | Tyler Naquin | OF |
| 5 | 1 | 5 | Greensboro (from Coney Island) |
Shohei Ohtani (prospect) |
P |
| 6 | 1 | 6 | Green Bay | Junior Guerra | P |
| 7 | 1 | 7 | Tampa | Amed Rosario (prospect) |
SS |
| 8 | 1 | 8 | Tidewater | Nick Senzel (prospect) |
3B |
| 9 | 1 | 9 | Westchester | Ryon Healy | 3B |
| 10 | 1 | 10 | Wildwood (from Stamford) |
Aledmys Diaz | SS |
| 11 | 1 | 11 | Gulf Breeze | Trevor Bauer | P |
| 12 | 1 | 12 | Reed | Tyler Anderson | P |
| 13 | 1 | 13 | Glab | Seung-Hwan Oh | P |
| 14 | 1 | 14 | Arizona | Chris Devenski | P |
| 15 | 1 | 15 | San Diego | Chad Kuhl | P |
| 16 | 1 | 16 | Beantown | Daniel Descalso | SS |
| 17 | 1 | 17 | Freeport | Reynaldo Lopez | P |
| 18 | 1 | 18 | Mokena | Tyler Chatwood | P |
| 19 | 1 | 19 | Wildwood | Cody Bellinger (prospect) |
1B |
| 20 | 1 | 20 | Greensboro | Carlos Torres | P |
| 21 | 1 | 21 | Chappaqua | Cam Bedrosian | P |
| 22 | 1 | 22 | East Coast | Michael Kopech (prospect) |
P |
| 23 | 1 | 23 | Elmjack | Vladimir Gurrero (prospect) |
3B |
| 24 | 1 | 24 | Brooklyn | Dan Straily | P |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 25 | 2 | 1 | Louisiana | Jason Groome (prospect) |
P |
| 26 | 2 | 2 | Durham | Joe Musgrove | P |
| 27 | 2 | 3 | Brooklyn (from Jonesboro) |
Darwin Barney | 2B |
| 28 | 2 | 4 | Long Island | Nate Jones | P |
| 29 | 2 | 5 | Coney Island | Rowdy Tellez (prospect) |
1B |
| 30 | 2 | 6 | Green Bay | Tony Wolters | C |
| 31 | 2 | 7 | Tampa | Dan Volgelbach | 1B |
| 32 | 2 | 8 | Tidewater | Edwin Diaz | P |
| 33 | 2 | 9 | Westchester | Robbie Grossman | OF |
| 34 | 2 | 10 | Stamford | Ryan Dull | P |
| 35 | 2 | 11 | Gulf Breeze | Keon Broxton | OF |
| 36 | 2 | 12 | Reed | Albert Almora | OF |
| 37 | 2 | 13 | Glab | Ryan Schimpf | 2B |
| 38 | 2 | 14 | Arizona | Derek Law | P |
| 39 | 2 | 15 | San Diego | Adam Frazier | OF |
| 40 | 2 | 16 | Long Island (from Beantown) |
Mark Rzepczynski | P |
| 41 | 2 | 17 | Freeport | Brent Honeywell (prospect) |
P |
| 42 | 2 | 18 | Mokena | Whit Merrifield | 2B |
| 43 | 2 | 19 | Wildwood | Andrew Toles | OF |
| 44 | 2 | 20 | Greensboro | Tony Barnette | P |
| 45 | 2 | 21 | Chappaqua | Matt Bush | P |
| 46 | 2 | 22 | East Coast | Josh Hader (prospect) |
P |
| 47 | 2 | 23 | Elmjack | Luke Weaver | P |
| 48 | 2 | 24 | Brooklyn | Brandon Kintzler | P |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 49 | 3 | 1 | Louisiana | Anderson Espinosa (prospect) |
P |
| 50 | 3 | 2 | Durham | Jharel Cotton | P |
| 51 | 3 | 3 | Jonesboro | Jefry Marte | 1B |
| 52 | 3 | 4 | Long Island | Clayton Richard | P |
| 53 | 3 | 5 | Coney Island | Joe Biagini | P |
| 54 | 3 | 6 | Green Bay | Adam Ottavino | P |
| 55 | 3 | 7 | Tampa | Tyler Skaggs | P |
| 56 | 3 | 8 | Tidewater | Carson Kelly | C |
| 57 | 3 | 9 | Westchester | Jim Johnson | P |
| 58 | 3 | 10 | Stamford | Luis Cessa | P |
| 59 | 3 | 11 | Gulf Breeze | Jett Bandy | C |
| 60 | 3 | 12 | Reed | Kyle Barraclough | P |
| 61 | 3 | 13 | Glab | Carson Fullmer | P |
| 62 | 3 | 14 | Arizona | Seth Lugo | P |
| 63 | 3 | 15 | San Diego | Juan Centeno | C |
| 64 | 3 | 16 | Beantown | Brian Flynn | P |
| 65 | 3 | 17 | Freeport | Matt Joyce | OF |
| 66 | 3 | 18 | Mokena | Ryan Rua | OF |
| 67 | 3 | 19 | Wildwood | Matt Strahm | P |
| 68 | 3 | 20 | Greensboro | Francisco Mejia (prospect) |
C |
| 69 | 3 | 21 | Chappaqua | T.J. Rivera | 2B |
| 70 | 3 | 22 | East Coast | Jeimer Candelario | 3B |
| 71 | 3 | 23 | Elmjack | David Paulino | P |
| 72 | 3 | 24 | Brooklyn | Alex Claudio | P |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 73 | 4 | 1 | Louisiana | Tyler Austin | 1B |
| 74 | 4 | 2 | Durham | Alex Dickerson | OF |
| 75 | 4 | 3 | Jonesboro | Edinson Volquez | P |
| 76 | 4 | 4 | Long Island | Heath Hembree | P |
| 77 | 4 | 5 | Coney Island | Derek Holland | P |
| 78 | 4 | 6 | Green Bay | Joey Rickard | OF |
| 79 | 4 | 7 | Tampa | Amir Garrett (prospect) |
P |
| 80 | 4 | 8 | Tidewater | Ryan Buchter | P |
| 81 | 4 | 9 | Westchester | Kyle Ryan | P |
| 82 | 4 | 10 | Stamford | Jeff Hoffman | P |
| 83 | 4 | 11 | Gulf Breeze (from Greensboro through Gulf Breeze) |
Eric Thames (prospect) |
1B |
| 84 | 4 | 12 | Reed | Trevor Cahill | P |
| 85 | 4 | 13 | Glab | Ian Krol | P |
| 86 | 4 | 14 | Arizona | Pedro Severino | C |
| 87 | 4 | 15 | San Diego | Cal Quantrill (prospect) |
P |
| 88 | 4 | 16 | Greensboro (from Beantown) |
Dustin McGowan | P |
| 89 | 4 | 17 | Long Island (from Freeport) |
Zach Wheeler (prospect) |
P |
| 90 | 4 | 18 | Mokena | Matt Bowman | P |
| 91 | 4 | 19 | Wildwood | Bruce Maxwell | C |
| 92 | 4 | 20 | Greensboro | Trey Mancini | 1B |
| 93 | 4 | 21 | Chappaqua | Roman Quinn | OF |
| 94 | 4 | 22 | East Coast | Luis Perdomo | P |
| 95 | 4 | 23 | Elmjack | Eloy Jimenez (prospect) |
OF |
| 96 | 4 | 24 | Brooklyn | Coco Crisp | OF |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 97 | 5 | 1 | Louisiana | Adam Rosales | 3B |
| 98 | 5 | 2 | Durham | Grant Dayton | P |
| 99 | 5 | 3 | Jonesboro | Jhoulys Chacin | P |
| 100 | 5 | 4 |
Beantown |
Nick Wittgren | P |
| 101 | 5 | 5 | Coney Island | Jhan Marinez | P |
| 102 | 5 | 6 | Green Bay | Dae-Ho Lee | 1B |
| 103 | 5 | 7 | Tampa | Tyler O'Neil (prospect) |
OF |
| 104 | 5 | 8 | Tidewater | Mickey Moniak (prospect) |
OF |
| 105 | 5 | 9 | Westchester | Kirk Niewenhuis | OF |
| 106 | 5 | 10 | Stamford | Hunter Dozier | OF |
| 107 | 5 | 11 | Chappaqua (from Gulf Breeze) |
Mauricio Cabrera | P |
| 108 | 5 | 12 | Reed | Brandon Nimmo | OF |
| 109 | 5 | 13 | Glab | A J Griffin | P |
| 110 | 5 | 14 | Arizona | Albert Suarez | P |
| 111 | 5 | 15 | San Diego | Ross Stripling | P |
| 112 | 5 | 16 | Tidewater (from Beantown) |
Deolis Guerra | P |
| 113 | 5 | 17 | Greensboro (from Freeport) |
Neftali Feliz | P |
| 114 | 5 | 18 | Mokena | Sammy Solis | P |
| 115 | 5 | 19 | Wildwood | Kyle Lewis (prospect) |
OF |
| 116 | 5 | 20 | Coney Island (from Greensboro) |
Ian Happ (prospect) |
2B |
| 117 | 5 | 21 | Chappaqua | Ronald Torreyes | 3B |
| 118 | 5 | 22 | East Coast | A.J. Puk (prospect) |
P |
| 119 | 5 | 23 | Elmjack | German Marquez | P |
| 120 | 5 | 24 | Brooklyn | Jerry Blevins | P |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 121 | 6 | 1 | Louisiana | Ben Revere | OF |
| 122 | 6 | 2 | Durham | Yadiel Rivera | 3B |
| 123 | 6 | 3 | Jonesboro | Jered Weaver | P |
| 124 | 6 | 4 | Long Island | Luis Sardinas | SS |
| 125 | 6 | 5 | Coney Island | Omar Narvaez | C |
| 126 | 6 | 6 | Green Bay | Rene Rivera | C |
| 127 | 6 | 7 | Tampa | Erasmo Ramirez | P |
| 128 | 6 | 8 | Tidewater | Aaron Blair | P |
| 129 | 6 | 9 | Westchester | Christian Friedrich | P |
| 130 | 6 | 10 | Stamford | Fernando Rodney | P |
| 131 | 6 | 11 | Gulf Breeze | Matt Barnes | P |
| 132 | 6 | 12 | Reed | Juan Nicasio | P |
| 133 | 6 | 13 | Glab | Xavier Cedeno | P |
| 134 | 6 | 14 | Arizona | Enrique Hernandez | OF |
| 135 | 6 | 15 | San Diego | Luis Urias (prospect) |
SS |
| 136 | 6 | 16 | Beantown | Blake Swihart | OF |
| 137 | 6 | 17 | Freeport | Carl Edwards | P |
| 138 | 6 | 18 | Mokena | Kennys Vargas | 1B |
| 139 | 6 | 19 | Louisiana (from Wildwood) |
Andrew Susac | C |
| 140 | 6 | 20 | Greensboro | Donnie Hart | P |
| 141 | 6 | 21 | Stamford (from Chappaqua) |
Michael Dunn | P |
| 142 | 6 | 22 | East Coast | Yohander Mendez | P |
| 143 | 6 | 23 | Chappaqua (from Elmjack) |
Austin Romine | C |
| 144 | 6 | 24 | Brooklyn | Jeff Mathis | C |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 145 | 7 | 1 | Louisiana | Jacob Barnes | P |
| 146 | 7 | 2 | Durham | Tyler Wilson | P |
| 147 | 7 | 3 | Jonesboro | Matt Szcur | OF |
| 148 | 7 | 4 | Long Island | Jason Vargas | P |
| 149 | 7 | 5 | Coney Island | Eliezer Alvarez (prospect) |
2B |
| 150 | 7 | 6 | Green Bay | Bud Norris | P |
| 151 | 7 | 7 | Tampa | Andrew Romine | 3B |
| 152 | 7 | 8 | Tidewater | Tim Adleman | P |
| 153 | 7 | 9 | Westchester | Taylor Rogers | P |
| 154 | 7 | 10 | Stamford | UWC | |
| 155 | 7 | 11 | Chappaqua (from Gulf Breeze) |
Zack Collins (prospect) |
C |
| 156 | 7 | 12 | Reed | Andrew Triggs | P |
| 157 | 7 | 13 | Glab | Bonny Wilson | C |
| 158 | 7 | 14 | Arizona | Jake Barrett | P |
| 159 | 7 | 15 | San Diego | Ramon Cabrera | C |
| 160 | 7 | 16 | Beantown | AJ Schugel | P |
| 161 | 7 | 17 | Freeport | Tom Layne | P |
| 162 | 7 | 18 | Mokena | Sam Travis (prospect) |
1B |
| 163 | 7 | 19 | Wildwood | Erik Gonzalez | SS |
| 164 | 7 | 20 | Greensboro | Ben Gamel | OF |
| 165 | 7 | 21 | Durham (from Chappaqua) |
AJ Achter | P |
| 166 | 7 | 22 | East Coast | Roberto Perez | C |
| 167 | 7 | 23 | Elmjack | Gordon Beckham | 2B |
| 168 | 7 | 24 | Brooklyn | Chase D'Arnaud | SS |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 169 | 8 | 1 | Louisiana | Austin Jackson | OF |
| 170 | 8 | 2 | Durham | John Ryan Murphy | C |
| 171 | 8 | 3 | Jonesboro | Sean O'Malley | SS |
| 172 | 8 | 4 | Long Island | Jeremy Hazelbaker | OF |
| 173 | 8 | 5 | Coney Island | Ty Blach | P |
| 174 | 8 | 6 | Green Bay | Fernando Salas | P |
| 175 | 8 | 7 | Tampa | Chad Green | P |
| 176 | 8 | 8 | Tidewater | Nick Vincent | P |
| 177 | 8 | 9 | Westchester | David Ross | C |
| 178 | 8 | 10 | Stamford | UWC | |
| 179 | 8 | 11 | Gulf Breeze | Rob Refsnyder | OF |
| 180 | 8 | 12 | Reed | Mike Morin | P |
| 181 | 8 | 13 | Glab | Joey Wendle | 2B |
| 182 | 8 | 14 | Arizona | Kolby Allard (prospect) |
P |
| 183 | 8 | 15 | San Diego | Adrian Morejon (prospect) |
P |
| 184 | 8 | 16 | Beantown | Alexi Amarista | 2B |
| 185 | 8 | 17 | Freeport | Anthony Recker | C |
| 186 | 8 | 18 | Mokena | Stephen Gonsalves (prospect) |
P |
| 187 | 8 | 19 | Wildwood | Boone Logan | P |
| 188 | 8 | 20 | Greensboro | Adam Liberatore | P |
| 189 | 8 | 21 | Gulf Breeze (from Chappaqua) |
Blake Rutherford (prospect) |
OF |
| 190 | 8 | 22 | Chappaqua (from East Coast) |
Ariel Miranda | P |
| 191 | 8 | 23 | Elmjack | Yovani Gallardo | P |
| 192 | 8 | 24 | Brooklyn | Alec Asher | P |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 193 | 9 | 1 | Louisiana | Gavin Cecchini | SS |
| 194 | 9 | 2 | Stamford (from Durham) |
Eric Fryer | C |
| 195 | 9 | 3 | Jonesboro | Dillon Gee | P |
| 196 | 9 | 4 | Long Island | Chance Sisco (prospect) |
C |
| 197 | 9 | 5 | Coney Island | Richard Bleier | P |
| 198 | 9 | 6 | Green Bay | Ryan Hanigan | C |
| 199 | 9 | 7 | Tampa | Steven Brault | P |
| 200 | 9 | 8 | Tidewater | Erick Fedde (prospect) |
P |
| 201 | 9 | 9 | Brooklyn (from Westchester) |
Anthony Banda (prospect) |
P |
| 202 | 9 | 10 | Stamford | James Kaprielian (prospect) |
P |
| 203 | 9 | 11 | Gulf Breeze | Tyler Beede (prospect) |
P |
| 204 | 9 | 12 | Reed | Hank Conger | C |
| 205 | 9 | 13 | Glab | Kyle Tucker (prospect) |
OF |
| 206 | 9 | 14 | Arizona | Luis Castillo (prospect) |
P |
| 207 | 9 | 15 | San Diego | Carlos Asuaje | 2B |
| 208 | 9 | 16 | Long Island (from Beantown) |
Manuel Pina | C |
| 209 | 9 | 17 | Freeport | Nick Gordon (prospect) |
SS |
| 210 | 9 | 18 | Mokena | Charlie Tilson | OF |
| 211 | 9 | 19 | Wildwood | Koda Glover | P |
| 212 | 9 | 20 | Greensboro | Brandon Morrow | P |
| 213 | 9 | 21 | Gulf Breeze (from Chappaqua) |
Hunter Cervenka | P |
| 214 | 9 | 22 | East Coast | Arquimedes Caminero | P |
| 215 | 9 | 23 | Elmjack | Ramon Flores | OF |
| 216 | 9 | 24 | Brooklyn | Christian Arroyo (prospect) |
SS |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 217 | 10 | 1 | Louisiana | Dan Altavilla | P |
| 218 | 10 | 2 | Durham | Robert Andino | 2B |
| 219 | 10 | 3 | Jonesboro | Tommy La Stella | 3B |
| 220 | 10 | 4 | Long Island | Brian Ellington | P |
| 221 | 10 | 5 | Coney Island | Mark Teixeira | 1B |
| 222 | 10 | 6 | Green Bay | Tyler Kolek (prospect) |
P |
| 223 | 10 | 7 | Tampa | Teoscar Hernandez | OF |
| 224 | 10 | 8 | Tidewater | PASS | |
| 225 | 10 | 9 | Westchester | Jacob Faria (prospect) |
P |
| 226 | 10 | 10 | Stamford | Mike Clevinger | P |
| 227 | 10 | 11 | Gulf Breeze | Luis Ortiz (prospect) |
P |
| 228 | 10 | 12 | Reed | Erik Kratz | C |
| 229 | 10 | 13 | Glab | Vladimir Gutierrez (prospect) |
P |
| 230 | 10 | 14 | Arizona | Mitch Keller (prospect) |
P |
| 231 | 10 | 15 | San Diego | Guillermo Heredia | OF |
| 232 | 10 | 16 | Beantown | Greg Holland (prospect) |
P |
| 233 | 10 | 17 | Freeport | Randall Delgado | P |
| 234 | 10 | 18 | Mokena | Luke Maile | C |
| 235 | 10 | 19 | Stamford (from Wildwood) |
Casey Gillespie (prospect) |
1B |
| 236 | 10 | 20 | Coney Island (from Greensboro) |
Justin Nicolino | P |
| 237 | 10 | 21 | Tampa (from Chappaqua) |
John Phegley | C |
| 238 | 10 | 22 | East Coast | Peter Moylan | P |
| 239 | 10 | 23 | Elmjack | Ryan Howard | 1B |
| 240 | 10 | 24 | Brooklyn | PASS |
| Overall Pick |
Round number |
Pick number |
Team | Player Selected | Pos |
| 241 | 11 | 1 | Louisiana | Eddie Butler | P |
| 242 | 11 | 2 | Durham | Paul Clemens | P |
| 243 | 11 | 3 | Jonesboro | PASS | |
| 244 | 11 | 4 | Long Island | Jarrett Parker | OF |
| 245 | 11 | 5 | Coney Island | Luis Avilan | P |
| 246 | 11 | 6 | Green Bay | Cornelius Randolph (prospect) |
OF |
| 247 | 11 | 7 | Tampa | PASS | |
| 248 | 11 | 8 | Tidewater | PASS | |
| 249 | 11 | 9 | Westchester | Brian Anderson (prospect) |
3B |
| 250 | 11 | 10 | Wildwood (from Stamford) |
Edubray Ramos | P |
| 251 | 11 | 11 | Gulf Breeze | J.P.Howell | P |
| 252 | 11 | 12 | Reed | Joe Jimenez (prospect) |
P |
| 253 | 11 | 13 | Glab | PASS | |
| 254 | 11 | 14 | Arizona | J. C. Ramirez | P |
| 255 | 11 | 15 | San Diego | PASS | |
| 256 | 11 | 16 | Beantown | Mike Minor (prospect) |
P |
| 257 | 11 | 17 | Chappaqua (from Freeport) |
Matt Chapman (prospect) |
3B |
| 258 | 11 | 18 | Coney Island (from Mokena) |
Pete O'Brien | OF |
| 259 | 11 | 19 | Wildwood | Cody Anderson | P |
| 260 | 11 | 20 | Coney Island (from Greensboro) |
Michael Ynoa | P |
| 261 | 11 | 21 | Chappaqua | Brock Stewart | P |
| 262 | 11 | 22 | East Coast | Zach Eflin | P |
| 263 | 11 | 23 | Elmjack | Jonathan Niese | P |
| 264 | 11 | 24 | Brooklyn | PASS |
|
|
|
|
|
|
| XTR | 1 | Stamford | Marco Hernandez | 2B | |
| XTR | 2 | Stamford | Harrison Bader (prospect) |
OF | |
| XTR | 3 | Durham | Mike Pelfrey | P |
|
|
|
|
|
|
| 265 | XTR | 1 | Freeport |